binarize_percent¶

binarize_percent(netin, level, sign='pos', axis='time')[source]¶

Binarizes a network proprtionally. When axis=’time’ (only one available at the moment) then the top values for each edge time series are considered.

Parameters:

netin (array or dict) – network (graphlet or contact representation),
level (float) – Percent to keep (expressed as decimal, e.g. 0.1 = top 10%)
sign (str, default='pos') – States the sign of the thresholding. Can be ‘pos’, ‘neg’ or ‘both’. If “neg”, only negative values are thresholded and vice versa.
axis (str, default='time') – Specify which dimension thresholding is applied against. Can be ‘time’ (takes top % for each edge time-series) or ‘graphlet’ (takes top % for each graphlet)

Returns:

netout – Binarized network

Return type:

array or dict (depending on input)