remove_confounds

remove_confounds(timeseries, confounds, confound_selection=None, clean_params=None)

Removes specified confounds using nilearn.signal.clean

Parameters:

• timeseries (array or dataframe) – input timeseries with dimensions: (node,time)
• confounds (array or dataframe) – List of confounds. Expected format is (confound, time). If using TenetoBIDS, this does not need to be specified.
• confound_selection (list) – List of confounds. If None, all confoudns are removed
• clean_params (dict) – Dictionary of kawgs to pass to nilearn.signal.clean

Returns:

Return type:

Says all TenetBIDS.get_selected_files with confounds removed with _rmconfounds at the end.

Note

There may be some issues regarding loading non-cleaned data through the TenetoBIDS functions instead of the cleaned data. This depeneds on when you clean the data.